CDC Division of Viral Hepatitis licenses GeneTegra 2.0

The Centers for Disease Control and Prevention Division of Viral Hepatitis (DVH) is part of the National Center for HIV/AIDS, Viral Hepatitis, STD, and TB Prevention at CDC. In collaboration with domestic and global partners, DVH provides the scientific and programmatic foundation and leadership for the prevention and control of hepatitis virus infections and their manifestations.

About GeneTegra:
GeneTegra is a federated information integration solution that provides a common interaction environment to query data and knowledge from multiple sources The GeneTegra project implements a local-as-view approach to information integration, useful for situations where there does not exist a global reference ontology or taxonomy linked to data sources. The system uses ontologies as a common model for the syntax and semantics of data sources; it is designed to automatically generate ontologies as common representations of heterogeneous data sources, and to align these ontologies with each other to provide a common environment for the execution of queries. As such, it has resulted in a series of algorithms that are currently being implemented as a comprehensive integration solution, including our ASMOV algorithm for ontology alignment, which has consistently been one of the best performing solutions in the Ontology Alignment Evaluation Initiative (OAEI) contest, our semQA query algebra extension for distributing SPARQL queries, and the semCDI query formulation model, which enables the utilization of terminological and ontological relationships for data aggregation to join and query different data models

GeneTegra was developed under grant (1R43RR018667) with the National Center for Research Resources (NCRR).

About INFOTECH Soft:
INFOTECH Soft, based in Miami, Florida, is a company dedicated to the development of high quality, state-of-the-art software solutions for life sciences research. INFOTECH Soft specializes in the application of Semantic Web technology to information retrieval and integration for health research. Its staff consists of computer scientists and engineers with advanced post-graduate degrees, and with many years of collective experience in the design, development, production, marketing, sales, and support of sophisticated software solutions.

Roswell Park Cancer Institute licenses GeneTegra 2.0

Roswell Park Cancer Institute (RPCI) upgraded their institutional license for use of the GeneTegra 2.0 Enterprise system. RPCI, located in Buffalo, New York, is America’s oldest cancer center, and is designated a Comprehensive Cancer Center by NCI. GeneTegra is currently being used by RPCI cancer researchers to integrate information from several databases containing genetic, tissue, pathology, and clinical data.

About GeneTegra:
GeneTegra is a federated information integration solution that provides a common interaction environment to query data and knowledge from multiple sources The GeneTegra project implements a local-as-view approach to information integration, useful for situations where there does not exist a global reference ontology or taxonomy linked to data sources. The system uses ontologies as a common model for the syntax and semantics of data sources; it is designed to automatically generate ontologies as common representations of heterogeneous data sources, and to align these ontologies with each other to provide a common environment for the execution of queries. As such, it has resulted in a series of algorithms that are currently being implemented as a comprehensive integration solution, including our ASMOV algorithm for ontology alignment, which has consistently been one of the best performing solutions in the Ontology Alignment Evaluation Initiative (OAEI) contest, our semQA query algebra extension for distributing SPARQL queries, and the semCDI query formulation model, which enables the utilization of terminological and ontological relationships for data aggregation to join and query different data models

GeneTegra was developed under grant (1R43RR018667) with the National Center for Research Resources (NCRR).

About INFOTECH Soft:
INFOTECH Soft, based in Miami, Florida, is a company dedicated to the development of high quality, state-of-the-art software solutions for life sciences research. INFOTECH Soft specializes in the application of Semantic Web technology to information retrieval and integration for health research. Its staff consists of computer scientists and engineers with advanced post-graduate degrees, and with many years of collective experience in the design, development, production, marketing, sales, and support of sophisticated software solutions.

GeneTegra Version 2.0 Release

GeneTegra 2.0 Federated Information Integration Platform Released
GeneTegra version 2.0 has been released.GeneTegra is a federated information integration solution that provides a common interaction environment to query data and knowledge from multiple sources The GeneTegra project implements a local-as-view approach to information integration, useful for situations where there does not exist a global reference ontology or taxonomy linked to data sources. The system uses ontologies as a common model for the syntax and semantics of data sources; it is designed to automatically generate ontologies as common representations of heterogeneous data sources, and to align these ontologies with each other to provide a common environment for the execution of queries. As such, it has resulted in a series of algorithms that are currently being implemented as a comprehensive integration solution, including our ASMOV algorithm for ontology alignment, which has consistently been one of the best performing solutions in the Ontology Alignment Evaluation Initiative (OAEI) contest, our semQA query algebra extension for distributing SPARQL queries, and the semCDI query formulation model, which enables the utilization of terminological and ontological relationships for data aggregation to join and query different data models

GeneTegra was developed under grant (1R43RR018667) with the National Center for Research Resources (NCRR).

About INFOTECH Soft:
INFOTECH Soft, based in Miami, Florida, is a company dedicated to the development of high quality, state-of-the-art software solutions for life sciences research. INFOTECH Soft specializes in the application of Semantic Web technology to information retrieval and integration for health research. Its staff consists of computer scientists and engineers with advanced post-graduate degrees, and with many years of collective experience in the design, development, production, marketing, sales, and support of sophisticated software solutions.

DILS 2012 Conference paper featuring GeneTegra

GeneTegra at the 8th Data Integration in the Life Sciences Workshop (DILS 2012)

A paper on the GeneTegra Information Integration Platform has been accepted for the

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8th Data Integration in the Life Sciences Workshop (DILS 2012). In this paper, we present the GeneTegra system, an ontology-based information integration environment. We show its ability to query multiple diverse data sources, and we evaluate the relative performance of different data repositories. GeneTegra uses Semantic Web standards to resolve the semantic and syntactic diversity of the large and increasingly complex body of publicly available data. GeneTegra contains mechanisms to create ontology models of data sources using the OWL Web Ontology Language, and to define, plan, and execute queries against these models using the SPARQL query language. Data source formats supported include relational databases, XML and RDF data sources, and delimited text files. Experimental results have been obtained to show that GeneTegra obtains equivalent results from different data repositories containing the same data, illustrating the ability of the methods proposed in querying heterogeneous sources using the same modeling paradigm.

About INFOTECH Soft:
INFOTECH Soft, based in Miami, Florida, is a company dedicated to the development of high quality, state-of-the-art software solutions for life sciences research. INFOTECH Soft specializes in the application of Semantic Web technology to information retrieval and integration for health research. Its staff consists of computer scientists and engineers with advanced post-graduate degrees, and with many years of collective experience in the design, development, production, marketing, sales, and support of sophisticated software solutions.

Roswell Park Cancer Institute licenses GeneTegra

Roswell Park Cancer Institute purchased an institutional license for use of the GeneTegra Enterprise system. RPCI, located in Buffalo, New York, is America’s oldest cancer center, and is designated a Comprehensive Cancer Center by NCI. A thorough trial period lasting several months was engaged with IT research personnel at RPCI, during which the application was stringently evaluated for functionality, usability, and security, and during which INFOTECH Soft’s development and support team provided updates reflecting customer requirements. GeneTegra is currently being used by RPCI cancer researchers to integrate information from several databases containing genetic, tissue, pathology, and clinical data.

About GeneTegra:

GeneTegra is a federated information integration solution that provides a common interaction environment to query data and knowledge from multiple sources The GeneTegra project implements a local-as-view approach to information integration, useful for situations where there does not exist a global reference ontology or taxonomy linked to data sources. The system uses ontologies as a common model for the syntax and semantics of data sources; it is designed to automatically generate ontologies as common representations of heterogeneous data sources, and to align these ontologies with each other to provide a common environment for the execution of queries. As such, it has resulted in a series of algorithms that are currently being implemented as a comprehensive integration solution, including our ASMOV algorithm for ontology alignment, which has consistently been one of the best performing solutions in the Ontology Alignment Evaluation Initiative (OAEI) contest, our semQA query algebra extension for distributing SPARQL queries, and the semCDI query formulation model, which enables the utilization of terminological and ontological relationships for data aggregation to join and query different data models

GeneTegra was developed under grant (1R43RR018667) with the National Center for Research Resources (NCRR).

About INFOTECH Soft:
INFOTECH Soft, based in Miami, Florida, is a company dedicated to the development of high quality, state-of-the-art software solutions for life sciences research. INFOTECH Soft specializes in the application of Semantic Web technology to information retrieval and integration for health research. Its staff consists of computer scientists and engineers with advanced post-graduate degrees, and with many years of collective experience in the design, development, production, marketing, sales, and support of sophisticated software solutions.

 

 

 

GeneTegra Version 1.0 Release

INFOTECH Soft has released GeneTegra version 1.0. GeneTegra is a federated information integration solution that provides a common interaction environment to query data and knowledge from multiple sources. The GeneTegra project implements a local-as-view approach to information integration, useful for situations where there does not exist a global reference ontology or taxonomy linked to data sources. The system uses ontologies as a common model for the syntax and semantics of data sources; it is designed to automatically generate ontologies as common representations of heterogeneous data sources, and to align these ontologies with each other to provide a common environment for the execution of queries. As such, it has resulted in a series of algorithms that are currently being implemented as a comprehensive integration solution, including our ASMOV algorithm for ontology alignment, which has consistently been one of the best performing solutions in the Ontology Alignment Evaluation Initiative (OAEI) contest, our semQA query algebra extension for distributing SPARQL queries, and the semCDI query formulation model, which enables the utilization of terminological and ontological relationships for data aggregation to join and query different data models

GeneTegra was developed under grant (1R43RR018667) with the National Center for Research Resources (NCRR).

About INFOTECH Soft:
INFOTECH Soft, based in Miami, Florida, is a company dedicated to the development of high quality, state-of-the-art software solutions for life sciences research. INFOTECH Soft specializes in the application of Semantic Web technology to information retrieval and integration for health research. Its staff consists of computer scientists and engineers with advanced post-graduate degrees, and with many years of collective experience in the design, development, production, marketing, sales, and support of sophisticated software solutions.